Our final release of the Phase 3 variant set is now available on the FTP site.
This update represents version 5 of our release. The issues which have been resolved since our initial release are covered in the Known Issues README
This release includes super population allele frequencies in the main release vcfs and functional annotation from the Ensembl Variant Effect Predictor along side many other datasets in the supporting directory. The complete list of data is covered in the Supporting Directory README
Please send any questions about this data set to info@1000genomes.org