The New York Genome Center (NYGC), funded by NHGRI, has resequenced the 2504 sample phase three panel from the 1000 Genomes Project to 30x coverage. NYGC aligned the data to GRCh38 and those alignments are publicly available along with a data reuse statement. Details, including URLs for the data in ENA, are in our data portal (below) and are listed on our FTP site. The alignments can be accessed at the following locations:
An initial GATK HaplotypeCaller call set from NYGC is available on our FTP site. Analysis of this data is ongoing and further call sets are expected.