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IGSR and the 1000 Genomes Project

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The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. More information is available about the IGSR.

Latest Announcements

Tuesday March 12, 2019

Variant calls from 1000 Genomes Project data on the GRCh38 reference assembly - updates

We have produced an extended integrated and phased biallelic SNV and INDEL call set. This uses the same input data sets as our biallelic SNV call set but now includes INDELs in the creation of the phased call set.

The files include: per chromosome files with genotypes for all samples, a genome wide sites file and genotype files for each of the supporting call sets. The main files contain only unrelated individuals, with details for related individuals available in a separate set of files. Data files are available at: http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000_genomes_project/release/20190312_biallelic_SNV_and_INDEL/

A data note describing the biallelic SNV set is now available at Wellcome Open Research.

We will work toward making details of the SNV and INDEL data set available as soon as possible. The data is in the process of being submitted to EVA.

Please contact info@1000genomes.org with any questions.