The Initial Phase 3 variant list and phased genotypes

2014-06-24 00:00:00 +0100

The initial call set from the 1000 Genomes Project Phase 3 analysis is now available on our ftp site in the directory release/20130502/.

These release contains more than 79 million variant sites and includes not just biallelic snps but also indels, deletions, complex short substitutions and other structural variant classes. It is based on data from 2535 individuals from 26 different populations around the world.

More details about the variant set can be found in the README

Please send any questions about this data set to