Are the IGSR variants available in genome browsers?

Answer:

1000 Genomes Project data is available at both Ensembl and the UCSC Genome Browser.

Ensembl provides consequence information for the variants. The variants that are loaded into the Ensembl database and have consequence types assigned are displayed on the Variation view. Ensembl can also offer consequence predictions using their Variant Effect Predictor (VEP).

You can see individual genotype information in the Ensembl browser by looking at the Individual Genotypes section of the page from the menu on the left hand side.

Related questions:

Why are the coordinates of some variants different to what is displayed in other databases?

Answer:

Data from the 1000 Genomes Project has now been analysed multiple times and on different reference assemblies. In addition, further data sets have been generated and analysed. These studies, therefore, use different data, different reference assemblies and different methodologies, which can lead to different variant calls being made.

The studies that IGSR makes data available for are listed with their accompanying publications in our data portal. The publications can provide further details.

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